Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 10413
Gene Symbol: YAP1
YAP1
0.070 Biomarker disease BEFREE β-catenin, GAB1 and YAP1 were the only IHC markers of utility in classification of MBs into three subgroups viz. 26222673 2016
Entrez Id: 2549
Gene Symbol: GAB1
GAB1
0.010 Biomarker disease BEFREE β-catenin, GAB1 and YAP1 were the only IHC markers of utility in classification of MBs into three subgroups viz. 26222673 2016
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.100 Biomarker disease BEFREE β-arrestin1-mediated acetylation of Gli1 regulates Hedgehog/Gli signaling and modulates self-renewal of SHH medulloblastoma cancer stem cells. 28716052 2017
Entrez Id: 1786
Gene Symbol: DNMT1
DNMT1
0.340 Biomarker disease BEFREE Within this review, we summarize the main preclinical studies regarding epigenetic targets (such as HDAC, SIRT, BET, EZH2, G9a, LSD1, and DNMT) inhibitors in medulloblastoma. 30560106 2018
Entrez Id: 7018
Gene Symbol: TF
TF
0.010 AlteredExpression disease BEFREE With respect to clinical efficacy, the reduced expression of TR on DAOY medulloblastoma in vivo may be less significant than expected because of the extreme potency of immunotoxins observed in central nervous system tumors. 7643997 1995
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE Whilst drugs directly targeting SIRT1, were potent to trigger cell death at high concentrations only, introduction of synthetic miR-34a mimics was able to induce cell death in p53 mutated medulloblastoma and glioblastoma cell lines. 25250818 2014
Entrez Id: 407040
Gene Symbol: MIR34A
MIR34A
0.050 Biomarker disease BEFREE Whilst drugs directly targeting SIRT1, were potent to trigger cell death at high concentrations only, introduction of synthetic miR-34a mimics was able to induce cell death in p53 mutated medulloblastoma and glioblastoma cell lines. 25250818 2014
Entrez Id: 23411
Gene Symbol: SIRT1
SIRT1
0.030 Biomarker disease BEFREE Whilst drugs directly targeting SIRT1, were potent to trigger cell death at high concentrations only, introduction of synthetic miR-34a mimics was able to induce cell death in p53 mutated medulloblastoma and glioblastoma cell lines. 25250818 2014
Entrez Id: 8842
Gene Symbol: PROM1
PROM1
0.080 AlteredExpression disease BEFREE While most medulloblastoma samples expressed CD133 and LIN28, OCT4 expression was found to be more sporadic, with detectable levels occurring in 48% of tumors. 21725800 2012
Entrez Id: 10985
Gene Symbol: GCN1
GCN1
0.010 AlteredExpression disease BEFREE While all strains replicated at low levels in the medulloblastoma cell line DAOY from a cerebellar neuronal tumour, JCV(Mad1) replicated better in astroglial SVG cells than JCV(Mad1D) or JCV(GCN1) and all strains replicated at higher levels in COS-7 kidney cells, suggesting that the GCN1-deletion confers a disadvantage for viral growth in central nervous system white matter. 21940415 2012
Entrez Id: 4084
Gene Symbol: MXD1
MXD1
0.020 AlteredExpression disease BEFREE While all strains replicated at low levels in the medulloblastoma cell line DAOY from a cerebellar neuronal tumour, JCV(Mad1) replicated better in astroglial SVG cells than JCV(Mad1D) or JCV(GCN1) and all strains replicated at higher levels in COS-7 kidney cells, suggesting that the GCN1-deletion confers a disadvantage for viral growth in central nervous system white matter. 21940415 2012
Entrez Id: 8379
Gene Symbol: MAD1L1
MAD1L1
0.010 AlteredExpression disease BEFREE While all strains replicated at low levels in the medulloblastoma cell line DAOY from a cerebellar neuronal tumour, JCV(Mad1) replicated better in astroglial SVG cells than JCV(Mad1D) or JCV(GCN1) and all strains replicated at higher levels in COS-7 kidney cells, suggesting that the GCN1-deletion confers a disadvantage for viral growth in central nervous system white matter. 21940415 2012
Entrez Id: 4440
Gene Symbol: MSI1
MSI1
0.050 AlteredExpression disease BEFREE While Msi1 is barely detected in normal adult tissue, it has been observed to be highly expressed in numerous tumor types (e.g. breast, colon, medulloblastoma, glioblastoma, and et cetera). 21881409 2013
Entrez Id: 4613
Gene Symbol: MYCN
MYCN
0.400 Biomarker disease BEFREE Whereas MYC/MYCN oncogene amplifications had a high prognostic value in pediatric MB, these aberrations were rarely observed in adult tumors. 20479417 2010
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.400 GeneticVariation disease BEFREE Whereas Gorlin's syndrome patients carry germ-line mutations in the patched (PTCH) gene, Turcot's syndrome patients with MBs carry germ-line mutations of the adenomatous polyposis coli (APC) gene. 11585731 2001
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.400 GeneticVariation disease BEFREE Whereas genetic mutations in PTCH1 have previously been shown to lead to medulloblastoma, our study indicates that epigenetic silencing of PTCH1, and other critical developmental loci, by DNA methylation is a fundamental process of pediatric medulloblastoma formation. 19966297 2010
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.400 GeneticVariation disease BEFREE Whereas APC mutations are rare in sporadic MBs, a hot-spot region of beta-catenin (CTNNB1) mutations was identified in a subset of MBs. 11585731 2001
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.030 AlteredExpression disease BEFREE When using RNAi and a pharmacological inhibitor selective for PCTK1, we could show that this kinase plays a crucial role in the proliferation of MB cell lines and the activation of the mammalian target of rapamycin (mTOR) pathway. 25402633 2015
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.400 Biomarker disease CTD_human When compared with Ptch1 heterozygous mutants, compound Ptch1/Hic1 heterozygotes display a fourfold increased incidence of medulloblastoma. 18347096 2008
Entrez Id: 2735
Gene Symbol: GLI1
GLI1
0.100 AlteredExpression disease BEFREE When compared with MB as a reference, the median GLI1 mRNA expression in GBM appeared 14.8 fold lower than that of the "high-Hh" cluster of MB but 5.6 fold higher than that of the "low-Hh" cluster of MB. 25775002 2015
Entrez Id: 7037
Gene Symbol: TFRC
TFRC
0.030 AlteredExpression disease BEFREE When applied to the immunomagnetic cell separation of the transferrin receptor (TfR)-overexpressed medulloblastoma cells using transferrin (Tf) as the targeting ligand, Tf-conjugated IONRs can capture 92 ± 3% of the targeted cells under a given condition (2.0 × 10<sup>4</sup> cells/mL, 0.2 mg Fe/mL concentration of magnetic materials, and 2.5 min of incubation time) compared to only 37 ± 2% when using the spherical IONPs, and 14 ± 2% when using commercially available magnetic beads, significantly improving the efficiency of separating the targeted cells. 28513139 2017
Entrez Id: 55624
Gene Symbol: POMGNT1
POMGNT1
0.010 Biomarker disease BEFREE We used two MB cell line (D283-MED and MEB-Med8A) and a widely used glioblastoma cell line (U87MG) for comparison. 30943920 2019
Entrez Id: 115752
Gene Symbol: DIS3L
DIS3L
0.010 Biomarker disease BEFREE We used genome-wide expression and chromatin-binding analysis in a human medulloblastoma cell line to characterize direct, evolutionarily conserved targets of Zfx, identifying Dis3L and Ube2j1 as two targets required for the growth of the human medulloblastoma cells. 25164012 2014
Entrez Id: 51465
Gene Symbol: UBE2J1
UBE2J1
0.010 Biomarker disease BEFREE We used genome-wide expression and chromatin-binding analysis in a human medulloblastoma cell line to characterize direct, evolutionarily conserved targets of Zfx, identifying Dis3L and Ube2j1 as two targets required for the growth of the human medulloblastoma cells. 25164012 2014
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.100 Biomarker disease BEFREE We therefore reason that targeted inhibition of miR-182 may prevent leptomeningeal spread in patients with non-SHH-MB. 22134538 2012